So, roughly 200 ish mile later the Transmission still makes a noise but have yet to see any negative side effects. I may drop the pan in the spring and re check for shavings.
Otherwise, I did a Intake/Exhaust gasket. The idle seems better but still rough. I still need to get the rear rotors either replaced or cut. Headliner still needs attention. The message center seem to dislike the cold, it has been freaking out a few times when the jeep is extremely cold.
So far, Just extremely short trips I am avg. 13 mpg in city. That is basically idling a bit, then driving half a mile to work and idling a bit, then turned off. Then repeat, rinse, and repeat again.
Still need to find some used tires for it.
Also been thinking of painting the lower cladding and bumper with some truck bedliner stuff, give it a rough look.
Other than that, still runs fine. During the gasket job I cleaned a large amount of buildup around the ports. Alot more throttle responsive and perhaps bit quicker now as well.